Scaffold Ga0304730_1001831

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1001831
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15684
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008554	Metagenome	331	Y
F011224	Metagenome	293	Y
F017266	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_100183131	F011224	N/A	MAYFDTLGFEWIFDITDYEKKKFWAALKGNDKVDMPIPRYAILRAQANPQRFPEIWAFESDISRDELEEYARENPQVLADAIRNCGQNVFKTHKPETVIN
Ga0304730_100183132	F017266	N/A	MMHGRQMGKSHVADILKSFYDRMGLKPKIKWQRLPGLKLQAYTDEISARGDLERGINESDMDPVQAWTTECNCGTRMSFNVWKFKNEKQITMFLIRWSS
Ga0304730_100183134	F008554	N/A	MNIEEEMINRAGNQMAQDIDREVLWGMLEGMGWCRVMIPTMGDAYKAVDIITWLEDNCKKAYERNGRDFIFEDSRDANWFILRWGTV