Scaffold Ga0304730_1000069

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1000069
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107344
• Total Scaffold Genes: 198
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004641	Metagenome / Metatranscriptome	429	Y
F034483	Metagenome	174	Y
F063400	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_1000069103	F004641	N/A	MSDENKQDAKGAFIEKLLFALLPLLIGSTGYLISALGSLQHDVTILNQKVSLVVTTDNKQATNSGAELAREKLRQDLEKEIQKNRDTIMENRMHIAILEEKLAVEKKIKTKTVKE
Ga0304730_1000069183	F063400	GGA	MIALNRKQMEKLVKITEHFKEVEWFTIEEVEENGIGPEVQVRFNLFGDFDKDDDVKVDITDLSTW
Ga0304730_100006985	F034483	GAGG	MKVYLSSTANLGDFINGMPVLSGLRKSYGKFELVIKGEMKKFNGIKEFLMYQDLFTEVNFDSDIWMYGSIINLSSWTREDKRHPDRPIETCRYENWLKEQYGMEFDVDDGFIVKTPEFDIEIKDDYYVGDRWDVGNIDDRRETHILSHLDKYEFIDYNKTMLENAYIIKNLKKPFITNFTGVGMLADMCNVPLYCVWKAEDWKPEFRRGEDVSWDDGKNINKVFEKHFYLNRQAKLVHAKDLETLL