Basic Information | |
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Taxon OID | 3300028394 Open in IMG/M |
Scaffold ID | Ga0304730_1000069 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 107344 |
Total Scaffold Genes | 198 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 144 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004641 | Metagenome / Metatranscriptome | 429 | Y |
F034483 | Metagenome | 174 | Y |
F063400 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0304730_1000069103 | F004641 | N/A | MSDENKQDAKGAFIEKLLFALLPLLIGSTGYLISALGSLQHDVTILNQKVSLVVTTDNKQATNSGAELAREKLRQDLEKEIQKNRDTIMENRMHIAILEEKLAVEKKIKTKTVKE |
Ga0304730_1000069183 | F063400 | GGA | MIALNRKQMEKLVKITEHFKEVEWFTIEEVEENGIGPEVQVRFNLFGDFDKDDDVKVDITDLSTW |
Ga0304730_100006985 | F034483 | GAGG | MKVYLSSTANLGDFINGMPVLSGLRKSYGKFELVIKGEMKKFNGIKEFLMYQDLFTEVNFDSDIWMYGSIINLSSWTREDKRHPDRPIETCRYENWLKEQYGMEFDVDDGFIVKTPEFDIEIKDDYYVGDRWDVGNIDDRRETHILSHLDKYEFIDYNKTMLENAYIIKNLKKPFITNFTGVGMLADMCNVPLYCVWKAEDWKPEFRRGEDVSWDDGKNINKVFEKHFYLNRQAKLVHAKDLETLL |
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