NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1000069

Scaffold Ga0304730_1000069


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1000069 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107344
Total Scaffold Genes198 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)144 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004641Metagenome / Metatranscriptome429Y
F034483Metagenome174Y
F063400Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_1000069103F004641N/AMSDENKQDAKGAFIEKLLFALLPLLIGSTGYLISALGSLQHDVTILNQKVSLVVTTDNKQATNSGAELAREKLRQDLEKEIQKNRDTIMENRMHIAILEEKLAVEKKIKTKTVKE
Ga0304730_1000069183F063400GGAMIALNRKQMEKLVKITEHFKEVEWFTIEEVEENGIGPEVQVRFNLFGDFDKDDDVKVDITDLSTW
Ga0304730_100006985F034483GAGGMKVYLSSTANLGDFINGMPVLSGLRKSYGKFELVIKGEMKKFNGIKEFLMYQDLFTEVNFDSDIWMYGSIINLSSWTREDKRHPDRPIETCRYENWLKEQYGMEFDVDDGFIVKTPEFDIEIKDDYYVGDRWDVGNIDDRRETHILSHLDKYEFIDYNKTMLENAYIIKNLKKPFITNFTGVGMLADMCNVPLYCVWKAEDWKPEFRRGEDVSWDDGKNINKVFEKHFYLNRQAKLVHAKDLETLL

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