Basic Information | |
---|---|
Taxon OID | 3300028393 Open in IMG/M |
Scaffold ID | Ga0304728_1002758 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 10910 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002977 | Metagenome / Metatranscriptome | 516 | Y |
F043403 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0304728_100275812 | F002977 | GAGG | MTPQIPAEGILKTNDWGDSKVYRVACECGDETHNHNVWIEAEDTGIVVTIYTTTHTNFWSKTRWYHMWTLLTKGFIDTEVGVHLTKQQTLNYADTLKSAIIDVEDFRKKNEQNKNI |
Ga0304728_100275823 | F043403 | N/A | PLTVGTVYTTNTTAGQFLTSNGANGTSWSNQAGNVLVVKNNPPELEVKGRMVINGRDLEERLNTIERVLTIPERDVILERKHPKLKKLYDEYITALGKYRTFEAIKGDE |
⦗Top⦘ |