Scaffold Ga0304729_1011440

Overview

Basic Information

• Taxon OID: 3300028392
• Scaffold ID: Ga0304729_1011440
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4110
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031094	Metagenome	183	Y
F038238	Metagenome / Metatranscriptome	166	N
F059961	Metagenome	133	Y
F062755	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_101144010	F038238	N/A	MKLDYQGKQLKLHKRATCLLELLKKAQSEQSRQEKLLAEWRAAGHFDNVRLFTHENNYLIRIAELNDIQKRILKSYYWLIVELYSISENFMLPVNVIQ
Ga0304729_101144011	F062755	N/A	MKTEKKEVVCIRLPESIKKKVDAEAKKMYLAPSKLVSIIVQKYYESKNQ
Ga0304729_101144014	F031094	N/A	MKTVISYNNNFYPYNFQFIPLGGDNIFLDYEIEETRFFLVKFRTIDIANNQIIISIVKI
Ga0304729_10114405	F059961	N/A	MIGQNNTKIMNEFPSIDLMIGQLSKSIKEIEQTSLSKENFVLQTLNAALRLALDIKHEELNYFKTKNN