Scaffold Ga0264391_10255

Overview

Basic Information

• Taxon OID: 3300028387
• Scaffold ID: Ga0264391_10255
• Source Dataset Name: ANME aggregate JGI 7061.QLV.BNCT.01.D9_combo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4397
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Ignavibacteriaceae → Ignavibacterium → Ignavibacterium album (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Sediment Cell Enrichment Communities From Methane Seep In Santa Monica Basin, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.0
  • Long. (^o): -118.0
  • Depth (m): 860

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066277	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0264391_102552	F066277	N/A	MDRKKFVALFSTSLLGAALLKANPFNFFAPKSNSKGSNSVKVKINPNAVNREKSGKKNG