Scaffold Ga0306869_1000472

Overview

Basic Information

• Taxon OID: 3300028377
• Scaffold ID: Ga0306869_1000472
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18691
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043167	Metagenome	156	Y
F046756	Metagenome	150	Y
F070731	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306869_10004721	F070731	N/A	VNGFISIKKNAVYHLVYTFIENADSFMIEDFVDYEIVRNRDTVMLDRLQTFIKDNDLEMPDLEEIKK
Ga0306869_10004722	F043167	N/A	LEHSPEVNGIIAIRGNPVDLLVHTFIETADSFMIEDFVDYEIVRNRDTVMLDRLQTFIRDNDLEMPDLDKIKEHYKIIE
Ga0306869_10004723	F046756	N/A	VYTFIENADSFMIEDFNDYEIVRNRDTVMLDRLQTFIKDNNLEMPDLEKIKKHYKIIE