Scaffold Ga0306912_1014198

Overview

Basic Information

• Taxon OID: 3300028376
• Scaffold ID: Ga0306912_1014198
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1720
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000656	Metagenome	956	Y
F093355	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306912_10141982	F093355	AGGA	MSNSITQIPVEGNTDCIALQKVCDDLHKAHKAALRALKNAKRASEGSSNHTTSTLLLDMDELRVRYWLRGQDAFVTSRKVAETLFTSRPPSNSLSMSMAKYLKAAGWYPAKKVRGTQYWTRGASAERVS
Ga0306912_10141983	F000656	GAG	MHMPHNGFDSLAAVARLNTDDTSHHRERWPTLDWVWDELDDLRRWQDEAIDAERDALQEELEAALDQRDALSEAVRLLLEPEPDMERVQDILMGGW