Scaffold Ga0306912_1001495

Overview

Basic Information

• Taxon OID: 3300028376
• Scaffold ID: Ga0306912_1001495
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10448
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001408	Metagenome	702	Y
F001814	Metagenome	630	Y
F040720	Metagenome	161	Y
F094668	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306912_100149519	F001408	N/A	MKKFKDYLKRTRHHLHAIVGITAGFLASLALSWVWLGFRNLDALDKAILFLPLAFVIGYAWERYQGIINKWDILVSGIAISIGVYLGGLLF
Ga0306912_100149520	F001814	GAG	MSINEHKDYSKPYWVAKKDDNSVVKYGEISEGSILNTKMKIFTFSEKEDMILFVIDSGGTYTDDEIGEEGYSPDIPDSWYNNTEL
Ga0306912_100149522	F094668	N/A	MKLITGQSTTTGEKFMAVYANVDSDFTVASTSGGDASFTVKLLAGGSLVGPYKNITGLTGDILCFKSDEL
Ga0306912_10014958	F040720	N/A	MRIYQLKTAKEFLEHHFTKEQNFTTAELMQLYAEDVATRFAAEIANETLGNKMEVSNSLHSKIESKYKSINW