NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306865_1011142

Scaffold Ga0306865_1011142


Overview

Basic Information
Taxon OID3300028375 Open in IMG/M
Scaffold IDGa0306865_1011142 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2327
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030493Metagenome / Metatranscriptome185Y
F036509Metagenome169N
F037002Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0306865_10111421F037002N/AMSASYSLDTPYSSQVIFLNSQNSIYKSIDGNGIYHYNLKTPVQLPTNCKMLLSIQDAQIPNISPNVGSTNNQISFSIPTFSKFFTITVADEDGDRVYSADEFINVVNEKILPNALAQFTLYGVYQPTQAKVKWFCNYPFEIINNDSYPTTCTDLLGFQKDFNNNLVQTGDVLLSSKVNPSFHITMPSCVNFTGTRFIFLKFKNISVNNLNSSGLTDDAIVRIDNNVPFGYMIFYKPAEAHRFLIGKQTITSIQFTLTDTQGNDLNIFSNDAQITLKIEYIYKAEMRSMEEGTLNYELRKLAEVTK
Ga0306865_10111422F036509N/AMSLHQATQKLTPQQSNVIPAGKFIYTDETFLVEQPIDPKGEAFPRQGKELIPHGFSFAHRNPDFTTVAGGVPIAQNFNTYIYNAQTGFV
Ga0306865_10111424F030493N/AMSESAKIANIHYIYQDRPNKERADKIVKRKLGRLGYKLDKANTDKDVLTAKRGDNVHINYSGTNINSPRDIISDAALATGVQRINPQFKERRQKTRSIMRQYGDDNSYSLGGHSLGGSIALNTLSQSKSIRDRVSKADVFNPG
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