Scaffold Ga0306865_1000515

Overview

Basic Information

• Taxon OID: 3300028375
• Scaffold ID: Ga0306865_1000515
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14668
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009218	Metagenome / Metatranscriptome	321	Y
F009454	Metagenome	317	Y
F009786	Metagenome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306865_100051510	F009218	GGTGG	MSAIRKNMGKLVDGAFLLKDEPDSKVGASWKFRRKIIFGSYRLGFGMIVFGALTFLVDQWGVGVTLITGGVSLISIITTAYTVSASWQDGRNNNQDWTNGDV
Ga0306865_100051519	F009786	AGGA	VNLQFSDLVQKLEAERNDISYRSHFTKPEVKVITKTMKVVPERFKRTYFHAGRYSAGDRDSLATEAWAEYEKQEGLS
Ga0306865_10005156	F009454	AGGA	MYEAIEAAIEEVQQPRSRFQLERFVTGSHATPEMRYYQTCLELQDMIYKFQVAQIGVQKAELKIKRLRETKDEMKELKAQETEIGLRQTRLAMIGAERELNDLVAIFDSFDTKFTRAEIEAAQPDYWNARLTGNAKAMLMGGTSVNAAHIEAMEQAGVLDNFIKEVQQSKKELGL