Scaffold Ga0306906_1004547

Overview

Basic Information

• Taxon OID: 3300028374
• Scaffold ID: Ga0306906_1004547
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3698
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000656	Metagenome	956	Y
F018128	Metagenome	236	Y
F045469	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306906_10045471	F000656	GGAGG	MQMPRNGFDNLAAVARLNTDDTSHHRERWPSLYWVWDELDDLRRWQDEAIDAERDALSEAAEQRDALSEAVRMLLGPEPDMDRVQDILMGGR
Ga0306906_10045472	F018128	GGGGG	MTNALTEESANRDEQAARMRAMWSAVVITAINDAIRHTARESKKHKGRALKTLALWANSRDGRDVLRMAGIDPDKRVTDCMVAFAAKRVPTTQPRKRETNL
Ga0306906_10045479	F045469	N/A	HVLCRADRRVKLDKLALRIGRRVLFASTGFFRHSIHTLNIARVIIDGKALDTVGNRWQ