NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306872_101205

Scaffold Ga0306872_101205


Overview

Basic Information
Taxon OID3300028361 Open in IMG/M
Scaffold IDGa0306872_101205 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8146
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003482Metagenome / Metatranscriptome484Y
F036509Metagenome169N
F037002Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0306872_10120510F036509N/AMWFKYIMSLHQLTTKLTPQQSNYIPAGKFIYTDETFLIKPPIDSRGEAYPRQGKPLVEHGFSYAHHNPEFIYKAGGKPLDQNFNTLIYNKLTGYT
Ga0306872_1012054F003482N/AMDLHDAKQQFEFKKSIKDTYSLIKRDTEHIPDLSTLDDDNKGQWVEHDDFAKVFDGLLDYCADEEYLDNLDWNSVNYQVYGKDYYEEKFPGFSDEVYEILAKSTEEENKVVDNRTPPLKITEGEFTINFD
Ga0306872_1012059F037002N/AMSYALDTAYSNQVIFLNSNNCNFKSIDGIGSYVYNLQTPIQKPSNTMMLLSITDAQIPNVSPNVTSSNNQISFYIPTFSKYFTITVGDSDGDAVYSADEFINEVNEKILPNALEQFYLYGTYEFSRAKVKWISNHSFQIINTASYPTTCIDLLGFRKDRNNNLQQTEDALLSSTVNPSFHITMPSSVNFTGARYIFVKFKNISVNNLNSRGITDNAMVRIDNNAPSGYMIFYRPSEVQRFIVGKQTISNIEFTLTDTFGDELNIFSNDAQITLKIEYMYKPEMRSFEEGTINYELRKLGKIPKDEETLKDIYNPETNRFEKDQIVGV
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