Scaffold Ga0306872_100323

Overview

Basic Information

• Taxon OID: 3300028361
• Scaffold ID: Ga0306872_100323
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19531
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (89.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004364	Metagenome	441	Y
F009587	Metagenome	315	N
F025663	Metagenome	200	Y
F033324	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306872_10032329	F025663	AGGA	MDCFDSVSAAEAGAWLHLTNLRTDAPAYVTGKDGTPDLTKPMRINLIGMDAPAAKAKARKRATDILKRRGGKMDFAKMSPAQIGAVIDEGQEGIVQAAVDQTIGWENLSLDGKPVGFSEDAAFAIYRKYPSILDEVTEFLKDRANFFAQA
Ga0306872_1003233	F004364	GGTGG	MTHHTERPCAAAGLTSYRYGSIMIGATSTRDALNEADRSLTQCAASIDQLEIWNALTGLYEKVKS
Ga0306872_10032337	F033324	N/A	MTDAAKRMMNAANTEALFVAAENALPGEARKAHLLAKVRRLHYDASIAQGFTPDEALILCMESVRIE
Ga0306872_1003237	F009587	GGTGG	MTHLYQICHNARRMDRHSEAELWSRFKAVRPQDACAVTPARPAPHPMPEQIDAALEWARNYLLTR