NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306888_108222

Scaffold Ga0306888_108222


Overview

Basic Information
Taxon OID3300028355 Open in IMG/M
Scaffold IDGa0306888_108222 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #186 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012537Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0306888_1082221F012537N/AAGSPVQNGQAVIPVAIGAAVVGGAAIGYATRYVADKHLGDDFDETAYDEAAVEELHAEIRENALERSYYDDSMLTNLNNVLANSKQVAYGDARVAAIEQMNLGNTEQDAIDAGVEVVDDFFAVQQENLLEHYNFQAENFSRQINAVKSAGLFMSEIFHSPDVYEHFYTLSAGTTSKTLVNGTNYDYSTFYYEYRDSSGTKQNTTASINDPIRVQVKPVSTGSKETFFDLPRFDDTLSKISTNHSETVSEITNFVNTVYPEYQAGDISLEDIVRPSELADKASDSEENPLSGADLAIMGLEANTQSKTTVRLVDDDIVLQGSLYLKSESGPSLEVGQTYSPSSFTGP
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