Scaffold Ga0306874_113971

Overview

Basic Information

• Taxon OID: 3300028343
• Scaffold ID: Ga0306874_113971
• Source Dataset Name: Saline lake microbial communities from Club lake, Antarctica - Metagenome #315 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 675
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Club lake
• Coordinates
  • Lat. (^o): -68.5417
  • Long. (^o): 78.2467

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027372	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306874_1139711	F027372	GGAG	MSDEIIVSSTEALYDDYANLKSQTPFGYTTYGLAGIVVNNCDIICGNCATDEELADNYNGTIFANSEWDYPAPVCEDEDCQKPLNVNLLVYKSHDPKLHFRLRMTEVLGGFADRDCYTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYANNIAPQLRQLSGYEDGTGKGTYNITPTDIVYDIHREDVLPAFQEA