Scaffold Ga0306882_115741

Overview

Basic Information

• Taxon OID: 3300028342
• Scaffold ID: Ga0306882_115741
• Source Dataset Name: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #81 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 713
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep lake
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049331	Metagenome	146	Y
F094661	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306882_1157411	F049331	N/A	YLPNHRDALQAHMHLLHKLGNAKTEANYHAYYQTLIKDGTANGATSNAYLTSSYVPFKTNVSL
Ga0306882_1157412	F094661	N/A	MKYRTCTLYNQKHAVLFKLSTSQTCPLCPQVDSALHILSGCQHTQIRNMITKRHNLACRMIFKAISKTGSLGSCIVSKDIGSNERMTMQNLQIPETAESRIVPKWLFPPRFPDKDRFTSSRPDFVLVTPIAAKTQKQQTNVGGWVLRSGRGQLRETGSTSAAPPATSRATNPRQH