NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247595_1043606

Scaffold Ga0247595_1043606


Overview

Basic Information
Taxon OID3300028333 Open in IMG/M
Scaffold IDGa0247595_1043606 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 60R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031107Metagenome / Metatranscriptome183Y
F085902Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0247595_10436061F085902N/ASTAGVVIPDAATGSVSSATILGITDAMIENISDDIADRDDLTIWMSVSNFRKFITALRGINNYYFDPSSISNRTGILQIAYPFQNVKVVGTSGISGDRIALMPDAYAVVGVDLLSDVENFQLWYDINADQLKHRLKSKLGSQVAFPEYIVSNGLN
Ga0247595_10436062F031107N/AMACNISSGFTLACRDNSGGIKNIYILSGSVSSVVEASEGLISALSGSGVFYKFELTKNTGDFTETPTPSLE

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