Scaffold Ga0268261_10001017

Overview

Basic Information

• Taxon OID: 3300028325
• Scaffold ID: Ga0268261_10001017
• Source Dataset Name: Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18913
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: laboratory colony in Florida, USA
• Coordinates
  • Lat. (^o): 26.0625
  • Long. (^o): -80.2332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023706	Metagenome	209	Y
F090566	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268261_1000101719	F023706	GGAG	LAGLVAPSQSSGSLKTTSMDTDISERAVSFETANMCMSMDMSGPLSNMAVGTTLNAMVTNTCLPAGQLPKKTHIYISGFRYTRTFLAWLRAFCPGVLTAQLKGEDLMVVPSTADVFRAAVSALRSLDEREGGFHTFTLPQDRCVRLQVKNLVRVCLRASSGRSWNP
Ga0268261_1000101724	F090566	AGGA	MGEENCVEDLDEDGYHSLGKMLQGSVHVTVWARRLTELDTPDGFVNLVRVG