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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028325 Open in IMG/M |
| Scaffold ID | Ga0268261_10000424 Open in IMG/M |
| Source Dataset Name | Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26324 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | laboratory colony in Florida, USA | |||||||
| Coordinates | Lat. (o) | 26.0625 | Long. (o) | -80.2332 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000031 | Metagenome | 4897 | Y |
| F000032 | Metagenome | 4750 | Y |
| F042069 | Metagenome | 159 | Y |
| F095686 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0268261_100004241 | F000032 | N/A | WRRMEKISWTDHVRNEDVLLRVKEQRNILHEIRKRKANWIGHILRRNCILQRVTEGKIEGGI |
| Ga0268261_1000042410 | F095686 | GAGG | VHLLRHVVKRTVTDSPFNTQASCSNCPLSAWINFMTRVIRDIVTLRRTAALLMLLAALRIRWSNSQSCKKHQKRFGSS |
| Ga0268261_100004242 | F000031 | AGAAGG | VTGRQHGRRRRKLLDDLKERRGYSHLKEEALDRTMWRARFGRGFGPVVRQTTK |
| Ga0268261_100004247 | F042069 | N/A | VGVLVIVCCTLAEVLLNLTEVFLTLTEVFPCFFLSCKANARVKLAKKGHGPHSTTLVVICVVHLLFVLFYVLFESKCVLPPGDNPIAVNKYHIISSIKLFH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |