Scaffold Ga0247662_1008237

Overview

Basic Information

• Taxon OID: 3300028293
• Scaffold ID: Ga0247662_1008237
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1616
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022956	Metagenome / Metatranscriptome	212	Y
F040350	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247662_10082371	F040350	GAGG	MLNRWYRLSLQIKMTLMIIFIVGVSAGTTEWLETRSIQHTVEDNVRNAALAVGRAVDQNVTTLAQLSNREARTKELDKILATLPDLLNIVLYEFPPGPEVSPLAIASAGPTELLLLTHPRQERAQVLVQRVREERQPLIDYADRTNTHRVFLAAPIFLRGVVV
Ga0247662_10082372	F022956	GAGG	VVLGAVLAEVLSLNGYEVIVVKTLMKGEIDRIPSINAVILDIDTTTAEKELAWLDALWTYDESLPIVFMGLQVSPEFRIRLCLQLGLQKTDALTLVQKPFRNDELLAAVRLVHESSVPGQVKEI