Scaffold Ga0257120_1003015

Overview

Basic Information

• Taxon OID: 3300028284
• Scaffold ID: Ga0257120_1003015
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9621
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Formosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070882	Metagenome / Metatranscriptome	122	N
F096659	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257120_10030154	F070882	N/A	MLYLLDFPNFSTSIINHSINKSDVFKKLDIHNDHQYFIQQFCKEAPNEVEVELKNNSIYSRVYFLLDQLEGILKKPDSQMIIDYEYIHYKYKVLLGICAMKYTVSVTHHKTRGIDYVTFNASFEPKTKTNYVRNVHRIVGRFDSYLGRNDPKLYQDARNKYFQDLLHKYDKL
Ga0257120_10030155	F096659	N/A	MTNKLQHTASQEDSIEFQENTLYVFLPTIDNREMNFQRIGLITKEKISESLMDKILDGCSLVEQKNEVGSLFPYLDILICPLSFFTAVNDEKLNDLTAYLDDMLLANQRYHKKSTIQFILKQRETSLTSGGEEYLKVLLSDMIINNKNQIAKEFKL