Scaffold Ga0256358_1013074

Overview

Basic Information

• Taxon OID: 3300028267
• Scaffold ID: Ga0256358_1013074
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1593
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003009	Metagenome / Metatranscriptome	513	Y
F101259	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256358_10130741	F101259	N/A	VFGLLLLFFLLFYQPTIHGTNEQNNYLTRVLLGGGSKFNRDVVYTNTYFVLESNLYHQITYALFVMCCFYGASFLPYGRFYNRLGGNWGLFGADCYILCYLAFPELRKPVILEFYYYYFFIKTVQLSKQRG
Ga0256358_10130743	F003009	N/A	MWSYGNYMNVTVGNLLKYFSTLSVAFHDINSLFGFFTFLTIFANLVSGTMLSFSLIPEPMFVPLVRDEEDLEYLYTDDFF