Basic Information | |
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Taxon OID | 3300028198 Open in IMG/M |
Scaffold ID | Ga0257121_1065469 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1430 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F051547 | Metagenome | 144 | N |
F060433 | Metagenome | 133 | Y |
F071758 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0257121_10654691 | F051547 | AGG | MIDPLLIATLSVIGGAILNTFRGFLGSSDATYDIKKFFGALIVAVFAGIAVAQTLSLAGLGIVETVLIGLSVGFSVDYAVSKA |
Ga0257121_10654692 | F060433 | N/A | MEVFSSILEPLLLAALIGMGSGLFAFFRKMSNTQRYLCETVQRLQKTLIILAKTVDRQSNRLHPKEADSELDDLVKELLDK |
Ga0257121_10654693 | F071758 | N/A | MDEKCKSCKITKYGYTDGQHSIFICFKCGRFDGMSGGDDSFLAKINEEPMSLLVMIQEKILIPISGI |
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