Scaffold Ga0257110_1013043

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1013043
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3721
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046001	Metagenome / Metatranscriptome	152	N
F056896	Metagenome / Metatranscriptome	137	N
F062159	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_101304314	F046001	N/A	TLTMTKIQFNTNYKTINQITNSNKLNRPVHIMYGGLLVDDSDIETVGKILDRELIKYKLK
Ga0257110_10130434	F062159	N/A	MKNLTEEYVNIDWSGICEDFDLDSGDISPDQSFEMDRALGNINEILHQFINQNK
Ga0257110_10130435	F056896	N/A	MWSNCCGAEASYLSDDLCGDCLEHAVFDDEDEDMGDTCRNGKEWNKCECC