Basic Information | |
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Taxon OID | 3300028197 Open in IMG/M |
Scaffold ID | Ga0257110_1012972 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3734 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010910 | Metagenome / Metatranscriptome | 297 | Y |
F012114 | Metagenome | 283 | Y |
F018906 | Metagenome | 232 | Y |
F019646 | Metagenome | 228 | Y |
F032992 | Metagenome | 178 | Y |
F093848 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0257110_10129721 | F032992 | AGGA | MNNAMDPNFRYYDCNNIVDEITGVEQENLSIMVAVPKINLDTPENRAENIAAISGIVEQQYRRGVQSFSYEEYTV |
Ga0257110_101297210 | F019646 | N/A | MITNSKNFEIVYTSDCCGASVHSDADICPTCYEHCEVIEDRTDYDDSEAVHFQAQLDFYGAG |
Ga0257110_10129722 | F093848 | AGGA | MNELMQDSLYDVLDKLSTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE |
Ga0257110_10129725 | F010910 | AGGAGG | MITLTTILGMFIGFEGYDNGKVYVGIYTPNCEYGYVITQEEIYLDTIFSKDSA |
Ga0257110_10129726 | F018906 | GAGG | MKTKRNTLKLNGTRFEADTHKEQGRYVKRYYFSNGLGASVACHDGTYGGHAGYFELAVLKYPIGTTPENTCELIYDTTINHDLGCIDVIGWLDFHEVASKLQEIRNYNTGSYDYNPS |
Ga0257110_10129727 | F012114 | GGAG | MSNNNCIMPKVRKNVWVVIDAQTGDKIGEVGAITESEARQLVSHHVLIPFRLSHIEE |
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