NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257110_1012972

Scaffold Ga0257110_1012972


Overview

Basic Information
Taxon OID3300028197 Open in IMG/M
Scaffold IDGa0257110_1012972 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3734
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010910Metagenome / Metatranscriptome297Y
F012114Metagenome283Y
F018906Metagenome232Y
F019646Metagenome228Y
F032992Metagenome178Y
F093848Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0257110_10129721F032992AGGAMNNAMDPNFRYYDCNNIVDEITGVEQENLSIMVAVPKINLDTPENRAENIAAISGIVEQQYRRGVQSFSYEEYTV
Ga0257110_101297210F019646N/AMITNSKNFEIVYTSDCCGASVHSDADICPTCYEHCEVIEDRTDYDDSEAVHFQAQLDFYGAG
Ga0257110_10129722F093848AGGAMNELMQDSLYDVLDKLSTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE
Ga0257110_10129725F010910AGGAGGMITLTTILGMFIGFEGYDNGKVYVGIYTPNCEYGYVITQEEIYLDTIFSKDSA
Ga0257110_10129726F018906GAGGMKTKRNTLKLNGTRFEADTHKEQGRYVKRYYFSNGLGASVACHDGTYGGHAGYFELAVLKYPIGTTPENTCELIYDTTINHDLGCIDVIGWLDFHEVASKLQEIRNYNTGSYDYNPS
Ga0257110_10129727F012114GGAGMSNNNCIMPKVRKNVWVVIDAQTGDKIGEVGAITESEARQLVSHHVLIPFRLSHIEE

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