Scaffold Ga0257110_1004161

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1004161
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6655
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F011489	Metagenome	290	N
F022880	Metagenome	212	N
F085359	Metagenome	111	N
F103289	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_100416111	F085359	N/A	MTNEKPSKLSPIQSLKDTKDYSQSEELQRKEYSRAKATEISLRSISEPGLFKATNEQAWTEGTNIRTALRIQPEATRGAVISMVKSVCDFVEAKKTLHSLQDYALCAETIFDLFPTLKLEEFRLICDRMKTGYYGKYYERLKIQEFRECIIKHEEERAPILERINSHITRGSDSERVAFEPQSMADLRRKRDPLHIPGLNEPQQSKEKA
Ga0257110_100416113	F011489	GAG	MRLKSREAWDEFLTRNYSKLLFTARKWTEEPRDLVHHTYLRCINKRYPSEEDENPLGYFIKAMYNEATRGQFKTIYQIIDAIPEEKETESDWTRAIQREQMQLILDRLSWFDRTIFGLYLQGWNMADLSRRTGIGESVLYRSIHESKKILKDVLRHRSKEE
Ga0257110_100416114	F022880	N/A	MFFVTGQKRNDRLAICKSCEHFVKSTKSCGPLLTEAFTDSKLCGCHMPTKTRLKVASCELGKWEAEITAEDIDEIQTFLKTENQFRTNGQLAKLYAKATGTNQQASSCSSCNRRMLEELQKLVNDANK
Ga0257110_10041612	F007366	GGA	MERKALKDTKLGAWFRNKAPKVFEAIGGVIPDGGALQAIGALIDASTESEEEKKQARMLLIELENEDRASARQREVDVTKVTGKRDWMQAIVGIAAMTIGVVMVIWAMTGIQDKEVFFHILGFAEGTLVGQVVNYYFGSAKT
Ga0257110_10041613	F103289	N/A	VTTKQTDMEHHTIELEDNTSLEIEYEVDAGVEGSYYEAPSNGFISIQSCKLCQHNGKQEHKVELYGIDDTLFPVDFDMIEHIIEEELRK