NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257114_1203944

Scaffold Ga0257114_1203944


Overview

Basic Information
Taxon OID3300028196 Open in IMG/M
Scaffold IDGa0257114_1203944 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018906Metagenome232Y
F093848Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0257114_12039442F093848AGGAGMNELIEENLYVTLDKLTTRLVQLYYVNSWELDDKDGMRISGNILYMRNLKNE
Ga0257114_12039443F018906N/ATCKVNPLKLNSTRFNTQAHREQGRYVKRYYFSNGLGASIALHDGTYGGQHGYFELAILKYEHGTDPEQTSEIIYDTPINEALGCVDVLGWLDFHEVAAKLQEIRNYNTGDYCYNERTN

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