NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257114_1059760

Scaffold Ga0257114_1059760


Overview

Basic Information
Taxon OID3300028196 Open in IMG/M
Scaffold IDGa0257114_1059760 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1655
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013232Metagenome / Metatranscriptome273Y
F015402Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0257114_10597603F015402N/AMGRTKNFLDGLNLNEEELNEELYSRADTEYQYKKWLESEEFVEYVNGELDSTRPRYSEHDIMSATRYASEHITIEPSEVGKKVYDMLFSEKIEEYLTCKTF
Ga0257114_10597606F013232N/AWKPGISFLKEDWISMKELKHFKDKKCTDRNCECSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIIR

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