Scaffold Ga0257114_1059760

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1059760
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013232	Metagenome / Metatranscriptome	273	Y
F015402	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10597603	F015402	N/A	MGRTKNFLDGLNLNEEELNEELYSRADTEYQYKKWLESEEFVEYVNGELDSTRPRYSEHDIMSATRYASEHITIEPSEVGKKVYDMLFSEKIEEYLTCKTF
Ga0257114_10597606	F013232	N/A	WKPGISFLKEDWISMKELKHFKDKKCTDRNCECSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIIR