Scaffold Ga0257114_1016633

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1016633
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3705
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025289	Metagenome / Metatranscriptome	202	Y
F041784	Metagenome / Metatranscriptome	159	Y
F044516	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_10166335	F041784	GAGG	METKTIGEVGVDSGQLFITDPCYIKHQEQGNGQWNMDWIDGDDGKRTYKTLPDPTLDGETKNFYSKVCEANGRSHDGVEVELGVAFGTTHGDGTYSVKGVFDDDGVMVGIFIDMDGRVKAEFKYEDEEWY
Ga0257114_10166336	F025289	N/A	MYVNKRERGTQMEDCKNISPTRWSMKQEILEDLEGYDEVNEDNIREICDSLVPVYNNSLIDFCAHYQGKEFWELWLNNDIGGETPLDILRGNLFSLYVNIGHEILSEREEE
Ga0257114_10166337	F044516	N/A	MCRDTGYYEPRQDVAMKVVQEMVEKKNLDLMVYYLKMAYMEDQHTYMNDLYWVMRNQFDDVDLQAVAKHVEEMLLIDDSDKELFEEV