NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257114_1016633

Scaffold Ga0257114_1016633


Overview

Basic Information
Taxon OID3300028196 Open in IMG/M
Scaffold IDGa0257114_1016633 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3705
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025289Metagenome / Metatranscriptome202Y
F041784Metagenome / Metatranscriptome159Y
F044516Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0257114_10166335F041784GAGGMETKTIGEVGVDSGQLFITDPCYIKHQEQGNGQWNMDWIDGDDGKRTYKTLPDPTLDGETKNFYSKVCEANGRSHDGVEVELGVAFGTTHGDGTYSVKGVFDDDGVMVGIFIDMDGRVKAEFKYEDEEWY
Ga0257114_10166336F025289N/AMYVNKRERGTQMEDCKNISPTRWSMKQEILEDLEGYDEVNEDNIREICDSLVPVYNNSLIDFCAHYQGKEFWELWLNNDIGGETPLDILRGNLFSLYVNIGHEILSEREEE
Ga0257114_10166337F044516N/AMCRDTGYYEPRQDVAMKVVQEMVEKKNLDLMVYYLKMAYMEDQHTYMNDLYWVMRNQFDDVDLQAVAKHVEEMLLIDDSDKELFEEV

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