Scaffold Ga0257107_1014552

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1014552
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2545
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F024128	Metagenome	207	Y
F027651	Metagenome / Metatranscriptome	194	Y
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10145523	F024128	N/A	MVMITKKDAKEYLEKTKRILDRGNASLSDNLKYINDTVSHLEINRFQGIGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRICMGAPVLQFAGPEEDVRKLTEY
Ga0257107_10145524	F027651	AGGA	MNMKQKVEKMNLNWGVIGLSNSINKNYHSWLSCVTDKKDYCIESDKFGHGFGVFNGSKYFRISLVYGNSIIDQKNSKLYKTAHKDNHLWGYVVKADSENHKRGDILTKNYKVVGNVLDGNTSNLGMPTSHYPNYTDCWAGAEIW
Ga0257107_10145526	F004418	N/A	MKKIINWLKDDWKNHRFRLFCETVGSLCFIAIYVLMAWYGEAVSILNIFLIQLVGSSLHIINAYLRNSVNLIALNCIVIAIALFGLAKMALSV
Ga0257107_10145527	F105352	GGAG	MSYCGRIRNSKENSYKLEIPRNQFDRIADAFEHQVIDINGYDVNKDTVIFTVSEKQRLWFEKIAKSKKIKWKGKIKVNPYYWITEMFLSRNIKRYLVK