Scaffold Ga0257107

Basic Information
Taxon OID	3300028192 Open in IMG/M
Scaffold ID	Ga0257107_1000031 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028192 Open in IMG/M

Scaffold ID

Ga0257107_1000031 Open in IMG/M

Source Dataset Name

Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46707
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (70.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

46707

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (70.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Northeast Subartic Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011529	Metagenome / Metatranscriptome	290	Y
F035723	Metagenome	171	Y
F065937	Metagenome / Metatranscriptome	127	N
F070936	Metagenome / Metatranscriptome	122	Y
F072758	Metagenome	121	Y
F090256	Metagenome	108	N
F105359	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_100003126	F072758	N/A	MDELYEKFEKLAISNEPLMAAGIMMAQAMKIYKAMLSADEFKLMTEHILESRDMIQTPDIPKLH
Ga0257107_100003129	F090256	AGGAGG	VQSNTSTVTVDTGEIGEQLIEEFFPKAERTDDWFDSKKDGTIREKTYEVKTFRLNNKDQGFWVDSSQFRKLDNVDILYFVKIPESLEEGATIYECMDHTGEDAYEAFKLGPIKQMRCYFLDNCKKITNIRDERTDVLYHNSVAMSKHKRFT
Ga0257107_100003146	F070936	GGA	MAINVQAALQEMQEAIELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGLYSSRSAEDAGIVRIDGKTKYKNANW
Ga0257107_100003164	F105359	N/A	MNNIDKIAKLIATLDNDGLNKIIPIFKQHRKTLAHATKMDLKVGMKVSWGAMGHGVVDKINRTKCVCTRNDGQKWTIPMTMLRIQ
Ga0257107_100003168	F011529	GGAG	MRWAEATIEKRKLEGVRLRSCRLWLDEKGFHPFLDQDELLRPDMQKSMSCKYNELPKEAWDLMDKYDAEKARKSRYAT
Ga0257107_100003171	F035723	GGAG	MVNLVTNKAEETTHLRSKSKFYIAGWVANRECENPQKLPESCKGDIVVERWHEEYLTGYGDFLANGECLMNR
Ga0257107_100003174	F065937	N/A	MFKKLLVATAAMAFSAVTFAGIALTGLYEGTLDSHGAYTQDITTTMKGSAGNSSVTVVLDGAFDVHDMYVETTSGPLTFTLGDKSGDDPDSVSIGVTATSGGFTVGLNQVSGGSTTIDVGGALAGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257107_1000031

Overview

Ecosystem & Geography

Associated Families

Sequences