Scaffold Ga0257122_1113130

Overview

Basic Information

• Taxon OID: 3300028177
• Scaffold ID: Ga0257122_1113130
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 751
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria italica (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022158	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257122_11131301	F022158	N/A	SARDKTDKCKRHGGGKRCIEPDCTASAQGKTDKCVAHGGGKRCPNCIDWVDSRSGNSSKYDGYCATCFKRCFPADARSQQIYAHTKEIMVRNIINENFEGFIHDRPLYTGNCDCTHRRRIDHRKMIGNTILAVETDEFGHRGYDKTDEEIRYDDVYMIHSGKWIFIRFNPDTNVSKVDIDDKLDTLIETMNECIVRIERDENTELIEITKLYC