Scaffold Ga0257122_1065499

Overview

Basic Information

• Taxon OID: 3300028177
• Scaffold ID: Ga0257122_1065499
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1110
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011736	Metagenome / Metatranscriptome	287	N
F088281	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257122_10654991	F011736	N/A	SSAAGLVRKSSHQLKMERCYMDKKNIILMVVFCLMSNGILAKNLETNELESNVPPKKIDIYEDWEVDRHDNIVRYSTHGSLVHGHRFGWIKKAGNCDIDILATTISTQKNNKDRLYDFKGESIDLRINFPQAEGEDPAIINTDLISVFDFANLKIAFLGNFIQGKIFDSLMAYFNTIKVEVTNPHKIYFDIPSDEYSLNGYVAAKLKAKELCEEIVKTTSL
Ga0257122_10654992	F088281	AGGAGG	MTKEEKSKRHQATEIIQLFREGRSDEALVLFEKYEFRKEFIGFAIKKGIDYEDARDLVQKFTIDKLYMQSNSIKNIEFARTWMYSVLNNMVNDQGRILKKTREVPLDEERDQSQLSKIMEEKSQTRSGCIQEQ