Scaffold Ga0257122_1009147

Overview

Basic Information

• Taxon OID: 3300028177
• Scaffold ID: Ga0257122_1009147
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4683
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004537	Metagenome / Metatranscriptome	434	Y
F032859	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257122_10091475	F032859	AGGTGG	MSFGGGGSGGSSTVSAHTHNSSLSGDGGSLDIGLSQINDSSLYTRIILGA
Ga0257122_10091476	F004537	GAGG	LTFSLSNQPNISTLPLLYPVRVICAAGATTGISFPDQFMGRAVSIKISNNDSANAASYDYNLNGQFQNLAASNFSTIDGTVVNYLTIIAGAAGTTLVEAQVLPAERNAPEIEVVV