NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268284_1004402

Scaffold Ga0268284_1004402


Overview

Basic Information
Taxon OID3300028176 Open in IMG/M
Scaffold IDGa0268284_1004402 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5336
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002824Metagenome527Y
F017088Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0268284_10044023F002824AGCAGMTKLTNTALKPGNGKPSAEEMTIVKTILNPAENKTEEKKPGMPIEPEKPIIPVPEPKKEMTMMEKILKIENLQLVIEKRAKLVQTRSELDRFQISSNDFNCTMRLHDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF
Ga0268284_10044024F017088N/AMSHTHYSGDPRQITARFPSTCHTCGKPIKKGETIIYWPNGKKAGHYDCDIRDYRQSIASFEDEDRYNNVYH

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