Scaffold Ga0268284_1004402

Overview

Basic Information

• Taxon OID: 3300028176
• Scaffold ID: Ga0268284_1004402
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_40m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5336
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F017088	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268284_10044023	F002824	AGCAG	MTKLTNTALKPGNGKPSAEEMTIVKTILNPAENKTEEKKPGMPIEPEKPIIPVPEPKKEMTMMEKILKIENLQLVIEKRAKLVQTRSELDRFQISSNDFNCTMRLHDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF
Ga0268284_10044024	F017088	N/A	MSHTHYSGDPRQITARFPSTCHTCGKPIKKGETIIYWPNGKKAGHYDCDIRDYRQSIASFEDEDRYNNVYH