Scaffold Ga0265596_1001172

Overview

Basic Information

• Taxon OID: 3300028161
• Scaffold ID: Ga0265596_1001172
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_60m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12826
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031354	Metagenome / Metatranscriptome	182	Y
F059653	Metagenome / Metatranscriptome	133	Y
F091296	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265596_100117210	F059653	AGGAG	MTNKEALQSLTEYENDNLLEKLLLDRGLATGGTYAAGNAKAIDLAAASLYFTLAAHPDLREGAYSTKYNSAQLIVMAKLIEQKYGEDAATVNGAAIW
Ga0265596_10011727	F031354	AGGA	MKTTIDINDILYPIINVPTVKATIDGGVYRNKKPLNSELQDIVIIPLSNFVGEEVMNDAVFMVNCFCKNFANGTPDITNLRAIVNAVVAVIEAYNNTNNYYIFTITNQMLLQDTEQISMSYVNLRINCLIEK
Ga0265596_10011729	F091296	GGAG	MVMKRYPHTATISYYGPGTTNSLGIYTPGTLVTIGIACNIQPNSTKYIIGKSGNMIGYSYNIYSEMFDGVDDVPADSKLTFFNKEHMILQLFPYQKHLEIKV