Scaffold Ga0268336_1002546

Overview

Basic Information

• Taxon OID: 3300028152
• Scaffold ID: Ga0268336_1002546
• Source Dataset Name: Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1018
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000255	Metagenome / Metatranscriptome	1449	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268336_10025461	F000255	AGG	MGRIGFVRCEKSRSDFMARTFVLIAPAHPVLHRVSCSYETIPNAPKHYATHQNMSL
Ga0268336_10025462	F000255	AGG	MGWIGCVRCEKSGRGFVARTFALIAPVHTILHRVSCSYETITNAPKHNETYENISLGSNGVDWVGSLQKIPT
Ga0268336_10025463	F000255	N/A	EKSGLDFVARIFALIAPVHTILHRVSCSYETIPNAPKHYAMHQNMSLGSNGVDWVRSL