NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228606_1008010

Scaffold Ga0228606_1008010


Overview

Basic Information
Taxon OID3300028135 Open in IMG/M
Scaffold IDGa0228606_1008010 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 7D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2954
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100883Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0228606_10080109F100883AGAAGGMNFHNIIFKRNDVLGGFRSRTHFTNGLSLSVSAGSGIYSNPREDRSSINQFLTFEIAVFDADDNFITKTFFPDGHDDVVGWLSRDEINDLMNRISNHGKPQKDIPGFEGTLDQLNKLNIR

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