Scaffold Ga0228606_1006137

Overview

Basic Information

• Taxon OID: 3300028135
• Scaffold ID: Ga0228606_1006137
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 7D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3392
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F023580	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228606_10061373	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEIELESGESGEVSAKSENRWSVGDEVEFEVTPSKWGDKMRLSKPGLTPNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRSTLISKL
Ga0228606_10061375	F023580	AGG	MNNIKLFLILNYGSTLNAAQTLDVTPNTVRNWCGRMPRNILKHLPEISQTCGATFAEIVEEVLICEREGIQ
Ga0228606_10061379	F011489	AGAAGG	MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCLDKRFPDGDNENPLGYFVKAMYTEATRGKFKDLYHVTDANPKEQTFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSSIGESTLYRSLHITRKILKYVLRN