NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233401_1065551

Scaffold Ga0233401_1065551


Overview

Basic Information
Taxon OID3300028127 Open in IMG/M
Scaffold IDGa0233401_1065551 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 49D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)867
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028965Metagenome / Metatranscriptome190Y
F066527Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0233401_10655511F066527GAGGMRNYHEDLLDEFGDDLERIFGPTEERTKGLTSLAGQPDGDLKTLLKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSVDTSTGKSIFYGYNLPVFVEQERVQGADEFAWEDVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRKQSDGTIDINDSQHATCSR
Ga0233401_10655512F028965N/AIERCRPSVQVEIVPKQCTLFGYEPQDLYDYMAKYDYVCVSAVRRAANADQRGMFFGQDIGMKHRQIKKYMDRLFVPREVHLATDYGAMAQADNTFGQLFD
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