Basic Information | |
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Taxon OID | 3300028125 Open in IMG/M |
Scaffold ID | Ga0256368_1000216 Open in IMG/M |
Source Dataset Name | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4897 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006939 | Metagenome / Metatranscriptome | 361 | N |
F030435 | Metagenome / Metatranscriptome | 185 | Y |
F053299 | Metagenome / Metatranscriptome | 141 | N |
F059965 | Metagenome / Metatranscriptome | 133 | N |
F086976 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256368_100021614 | F006939 | AGGAG | MTLPTNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGNMV |
Ga0256368_100021615 | F059965 | AGG | MPLPPSMEMELMELGILKGDIEELESIADQTGFHETRAEIKAWHDTLILDGKVMF |
Ga0256368_100021617 | F053299 | AGGAG | MNNYKPYYRTDKMKQEELRTAKYITILFFMMILFSFIGFAFVLVKAMLYMTGLLL |
Ga0256368_100021618 | F030435 | AGG | MNNQDILDMCKRLANKYYNHQEYDDIVSEGVVLCLKLRAEGVTEPSKLYYNARTAMFQYVNVGMSKFSYPKGMAGRDAAINDTTVYVDVEEAQIPADDLFGSYELKDSIEVLKKHLTVREWKVFISLYNNNNSLTETSKDLNITIRGLINIRERVRNKLVTF |
Ga0256368_10002169 | F086976 | AGGAG | MSGDKIPPIDPKTGQFVRPSDGNKVPSDGNKVYKTEIELTRALLDNEIPHELYVELLEVYHVAYGDAPEYGFVGVGCISFAEAMLQDHQGAVVKPIRIPRLYTDEDFNKENEE |
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