NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228621_1047178

Scaffold Ga0228621_1047178


Overview

Basic Information
Taxon OID3300028124 Open in IMG/M
Scaffold IDGa0228621_1047178 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 25D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029449Metagenome / Metatranscriptome188N
F045111Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0228621_10471781F029449AGAAGVAGRVPIIPGVPTPSDPQCALTYCGRIIAQVDCIKYIVQGTSACIDIQLFNANDQPLNLDTICDIHVQLTNELECVIANFWYPNVPSGSKGYLIDILQFTDTSGVIHNEGLIRICLPSTCTHTSPGNISAEILLTECGGNTGDTGVTGVGPTGTL
Ga0228621_10471782F045111N/AIDTLSSQIVNEEEMIFLIKTVPAWKTLRIEEISDKERISINALEEKED

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