NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255353_1053714

Scaffold Ga0255353_1053714


Overview

Basic Information
Taxon OID3300028070 Open in IMG/M
Scaffold IDGa0255353_1053714 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)809
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024018Metagenome207N
F036061Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0255353_10537141F024018N/AAHPTTAIDVAKLLAADNVSTADRIWAVDFEVKMPAELITEEDLKCPDCGKVHDPSLENARVVADTVTVLGGPDAQVSVDRVREYVLNWELEDGLHMTDFVLTGVKLLAAAEVV
Ga0255353_10537142F036061GGAGGVLDNPDNPAITQQGVHAVETPADLFSDPPFGHLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKAGKYVALCHRPGTIEGCWDRDVAPMCEYKNHEAVQCDQVAEWVVAFGKDMLMRTHRCLIHIPPALSDVSEHRVFPI
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