Scaffold Ga0256405_10024309

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256405_10024309

Scaffold Ga0256405_10024309

Overview

Basic Information
Taxon OID	3300028048 Open in IMG/M
Scaffold ID	Ga0256405_10024309 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5964
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	Canada: Alberta
Coordinates	Lat. (^o)	49.6935	Long. (^o)	-112.8418	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072445	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256405_100243092	F072445	N/A	MPTSVRDLVRGSDLHMKFVDYHESYWDDNKEFLRGDMWQFDFLNPPKIVFYPGDEIIHKRLNQVNLSMDTSVNGFEKRMRGNYVIRQQTGQSTNGQITLSFIDKEDQAIAYFVDDWKQKIADRDTKYSFRKEDVVCDCEMFITNSSRIDVRHLTFYNCIIMDAPLDENGVDSDGTDRSDIQLSLAFEHYEREFLNL

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