Scaffold Ga0256380_1004317

Overview

Basic Information

• Taxon OID: 3300028039
• Scaffold ID: Ga0256380_1004317
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2093
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 2300

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F042020	Metagenome / Metatranscriptome	159	N
F094399	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256380_10043172	F042020	GAGG	MTKPQFDLFESTFEEWLDELSLINHDESPGLRTVLHDLYMEGHTPLDARDALEVYYPEWHEELTYLEEHPIG
Ga0256380_10043174	F007828	AGG	MLNSLTTIVRSNQNATMIRVGTGSSAIYTIFDLKTQSNTYTGTLNATKKAWNKYYRNSRQFVTKSGANHRYLGA
Ga0256380_10043175	F094399	N/A	ETEARLERLRLREAKASAKSDPTLAPLLAQVDDLNKDIREAKKLLGEGPQSGVARIAKHQAWIERIELEMAEAEKALEFSEANKAHTQAQVAEAMQAYIETSKEISAEA