NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10016121

Scaffold Ga0247722_10016121


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10016121 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3136
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011997Metagenome / Metatranscriptome284Y
F038566Metagenome / Metatranscriptome165Y
F088286Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0247722_100161211F088286N/AMIQEIKLNGLDNKPIKTTKKPPPRSTNENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDNDGHKLDMRVIVFCPTIMSVANPIYETLKYLDEDDIIMDYSDDKLLNKLEEIEKEKEDIDDYNKYIIVWKKYLKIDEN
Ga0247722_100161212F011997N/AMSEKTIYDCERAKFEGFGTYKLPIEERVNEIMEATKKEYPNIDNYLLWLCAVDYVLEEKGLKKENDEGIKMYEEYVKQRKIFIYNTVSVEDDDVIKYDYNVLQEV
Ga0247722_100161214F038566N/AMSKINIYVSSKNRKSDETPSNFSVIIPDGLLRVNKDEYFTMSVNSFYCYNDFYQCNNNCNSFDIYGKNTSGVITGQQQFLLPVGNPNVIDIVSHMNSILQPANVLSCSYNNIQNKITFTRLTPQTPTNDTFYINTFKAGNFLGFKNDTEVLISFSGTTSTNPININSITALSIGIDGDISFNHNNMESNLNNSVYKASDLIFQTAVNVPKGYLITYQNIDGGDSFKYTLGNNDRIKYFILSVYDQDGKTISDMTDYMIQIQFTINKKNQQEQLLKTLIDYNKQSYLIIGHIFDIMNNMFNYLFKIKSNV
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