Basic Information | |
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Taxon OID | 3300028027 Open in IMG/M |
Scaffold ID | Ga0247722_10008191 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4691 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006844 | Metagenome / Metatranscriptome | 363 | Y |
F007112 | Metagenome | 357 | Y |
F034566 | Metagenome | 174 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247722_1000819110 | F034566 | AGG | MSFKLKSIIWVESTLIVILATALLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHGRDIDKANTVIADIIDRYNALVARYNKSVRGSDYNPLNPYSYKIMRTVP |
Ga0247722_100081913 | F007112 | AGGA | MHTLHYIAVEADSKQQAFDKVVVSLLPNEDGYRLADWSDWHVVGGGRWSSNANKENNLMAGYNDDPTDVLGFSEDKEKFQEALVSVGKFKAHAMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKEAATMLMGGWTPDSGLYDLEENIAEATYLKERLDKPEQSALQYLVPVDFHF |
Ga0247722_100081914 | F006844 | AGGAG | MAKWEIEVIFEPTGDYMNFVYETDNEDEDSIFSEVANQLSIVPNLVEKNEEE |
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