Scaffold Ga0247722_10008191

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10008191
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4691
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F034566	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000819110	F034566	AGG	MSFKLKSIIWVESTLIVILATALLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHGRDIDKANTVIADIIDRYNALVARYNKSVRGSDYNPLNPYSYKIMRTVP
Ga0247722_100081913	F007112	AGGA	MHTLHYIAVEADSKQQAFDKVVVSLLPNEDGYRLADWSDWHVVGGGRWSSNANKENNLMAGYNDDPTDVLGFSEDKEKFQEALVSVGKFKAHAMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKEAATMLMGGWTPDSGLYDLEENIAEATYLKERLDKPEQSALQYLVPVDFHF
Ga0247722_100081914	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFVYETDNEDEDSIFSEVANQLSIVPNLVEKNEEE