NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10002551

Scaffold Ga0247722_10002551


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10002551 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9330
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013864Metagenome / Metatranscriptome267Y
F034077Metagenome / Metatranscriptome175Y
F038994Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_100025511F038994N/AMVLSNAPRRVRQAASLTSKGCHFGSMPGIAPSVGRSSAIALAYKQAGMTCDCLGKIKYQTCGQQYQYLKDKNLIFNCKLTGGTGRQPWTKNCAST
Ga0247722_100025512F034077N/AMVNSKVARRVLFSSVSPTNGIKSDTVNGGGDKKGGSVPSGTGQMRSFAMRNTISEPAKHKDFVFRFIERLSPARNSGPKL
Ga0247722_100025517F013864AGTAGMESLIPSAKDNSSDVMVKYIVLGIILIVLFIAVKYVLGSQFTMIEGLVGRGDKNKPGERGPLDDENDGDIITIAKRQEELASKTQKSLNMDEHYNHYSQIIDNMDEWVNAKIVNSLKNVSREVHGEGKMEDIVRHMNELNTMNKFKLTLEDCSRYIDTK

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