Basic Information | |
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Taxon OID | 3300028027 Open in IMG/M |
Scaffold ID | Ga0247722_10000673 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20164 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (21.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010014 | Metagenome | 309 | Y |
F018866 | Metagenome | 232 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247722_1000067310 | F018866 | N/A | MDRHKTQKKVNDDKIDKDTFKILLEDSAKEAYARPWNRLERGLRLNRLRIFIEDISPQFNMTKEEKDSFFIFLQKAVDKKLLNTSKIVQYDKETQRIKTISGLEIKRNQDVLKWAFIKKQKPDGTRKKKAEDNFSVSTDATETMQHV |
Ga0247722_1000067312 | F010014 | AGTAG | MAQPSIPNDAILRAFPLPKFIPRTRREVNTIDSINARNFEHWQTDGKYDANRPDINKQSPFYDQSPIDSRMNDNKYRSQPRFDADSEKGGYNPYFDKYDTSFDPRNMARELRASVYEDKNTGYIKESEHLLQRNFDNRWLNPNVVSQTNAAELLRPKMDDIRVYYQPK |
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