Scaffold Ga0247722

Basic Information
Taxon OID	3300028027 Open in IMG/M
Scaffold ID	Ga0247722_10000103 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49653
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (17.81%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

49653

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (17.81%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021773	Metagenome / Metatranscriptome	217	Y
F044501	Metagenome / Metatranscriptome	154	Y
F093855	Metagenome	106	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000010355	F093855	N/A	MKRIKSFRLFEGLEGGEQMIYDQINTMIDANQFLKGEVVADKETVFEAGDFILLLGDLGHITDAHVEETVPGSKFDKGIDLKKAIISLVSNNKPTLMTKGFGASETEVTNIEEAEKFKWLGLDSKVPVGVDNIHKSEPNSEEFKSMNAYTYKDSRGNEFKIKVKEGEGEKTTFLSFIGAKIGNVGEKIVLSVMTAFPGQNGAEVANRNDFEKLGYYFTTTSKEVIEKSVGQVAEGLRHLRKFNNF
Ga0247722_1000010365	F021773	N/A	MKWIRNYKLFKEASEAGVEKQVKSLYSNKNLIHEICVSMVLLNNSFLDNILDRGLKARYSENSEIFLTDLKNLVLAKNRLSLGRFEGDTCVDDGDLGKINGLFESADFSIEKDWDKLANARVAARNIIDKLIPDAKLNSDDIKTIYWIGPNKTKEYGEDIVIETKDGKQYSLFLNKSLSAQKTASFNTFADDLIGADIERLYGEEYMPRWSKLTQEWVRLIYENSNKSIQRHIEKFIDPKRIETMGYFEYFDIRHQDPKFKHLGEFIEEFDKNILKFSDLLNEIWKHRENCFMDVERVEKEWYETKIVILNSKILENLLTTSLKTNFPEDIQKIEGDSFKLSGGTVKMKLFKTLVEKLGCLERPTYFLGNNGNQFNLVPSREFFRKYYDEIELKFDYHVNFEVSEEEENNDFRVKIGLDLDGERLIDMTIFVKFSGSELSGKLSAKYKYDLADNFNYLIAKKESSEETKNDNQDEEV
Ga0247722_1000010366	F044501	N/A	MKWLKTYKLYSESVVINLQYQSIDLMESLNIWHDVLLSSISAEEVDIFDKFSLPKDMFGGKLDLDYLVDNIEFINSLSSIGLKKSAVQNTDDHETFLNKPCKFMFVYKSESNELENPVYIIFQVWNETLNKWEEAKLYSINDDVKKFYDKLSSKTIEIIDGEGENYIYQTSNGSDWELQNLKKENDIYQRYFRREQLQQLLSDRNVKLTII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247722_10000103

Overview

Ecosystem & Geography

Associated Families

Sequences